PIMS Workshop on New Trends in Localized Patterns in PDES
Abstract:
Cellular adhesion is one of the most important interaction forces between cells and other tissue components. In 2006, Armstrong, Painter and Sherratt introduced a non-local PDE model for cellular adhesion, which was able to describe known experimental results on cell sorting and pattern formation. The pattern formation arises through non-local attractive interactions of the cells. In this talk I will analyse the underlying symmetries and bifurcations that lead to the observed patterns. (joint work with A. Buttenschoen).
PIMS Workshop on New Trends in Localized Patterns in PDES
Abstract:
Cell migration plays a central roles in embryonic development, wound healing and immune surveillance. In 2008, Yoichiro Mori, Alexandra Jilkine and LEK published a reaction-diffusion model for the initial step of cell migration, the front-back chemical polarization that sets a cell's directionality. (More detailed mathematical properties of this model were described by the same group in 2011.) Since then, progress has been made in investigating how that simple "wave-pinning" mechanism is shaped and tuned by feedback from other proteins, from the cell's environment (extracellular matrix), from interplay with larger signaling networks, and from cell-cell interactions. In this talk, we will describe some of this progress and mathematical questions that arise. In particular, AB will demonstrate how his numerical PDE bifurcation analysis has helped us to understand how cells repolarize to reverse their direction of motion.
I'll discuss recent joint work with Alex Wright (arXiv:
2103.07496) showing that typical large genus hyperbolic surfaces have first
Laplacian eigenvalue at least 3/16−ϵ.
Any countable group G gives rise to a von Neumann algebra L(G). The classification of these group von Neumann algebras is a central theme in operator algebras. I will survey recent rigidity results which provide instances when various algebraic properties of groups, such as the presence or absence of a direct product decomposition, are remembered by their von Neumann algebras. I will also explain the strongest such rigidity results, where L(G) completely remembers G, and discuss some of the open problems in the area.
Entropic optimal transport has received a lot of attention in recent years and has become a popular framework for computational optimal transport thanks to the Sinkhorn scaling algorithm. In this talk, I will discuss the multi-marginal case which arises in different applied contexts in physics, economics and machine learning. I will show in particular that the multi-marginal Schrödinger system is well posed (joint work with Maxime Laborde) and that the multi-marginal Sinkhorn algorithm converges linearly.
Mirzakhani gave an inductive procedure to build random hyperbolic surfaces by gluing together smaller random pieces along curves. She proved that as the length of the gluing curve grows, these families equidistribute in the moduli space of hyperbolic surfaces. In this talk, I’ll explain how the conjugacy (exposited in James’s talk) between the earthquake and horocycle flows provides a template for translating equidistribution results for flat surfaces into equidistribution results for hyperbolic ones. Using this correspondence, we address Mirzakhani’s twist torus conjecture and exhibit new limiting distributions for hyperbolic surfaces built out of symmetric pieces. This is joint work (in progress) with James Farre.
Cells in tissue can communicate short-range via direct contact, and long-range via diffusive signals. In addition, another class of cell-cell communication is by long, thin cellular protrusions that are ~100 microns in length and ~100 nanometers in width. These so-called non-canonical protrusions include cytonemes, nanotubes, and airinemes. But, before establishing communication, they must find their target cell. Here we demonstrate airinemes in zebrafish are consistent with a finite persistent random walk model. We study this model by stochastic simulation, and by numerically solving the survival probability equation using Strang splitting. The probability of contacting the target cell is maximized for a balance between ballistic search (straight) and diffusive (highly curved, random) search. We find that the curvature of airinemes in zebrafish, extracted from live cell microscopy, is approximately the same value as the optimum in the simple persistent random walk model. We also explore the ability of the target cell to infer direction of the airineme’s source, finding the experimentally observed parameters to be at a Pareto optimum balancing directional sensing with contact initiation.
A measured geodesic lamination on a hyperbolic surface encodes the
horizontal trajectory structure of certain quadratic differentials.
Thurston’s earthquake flow along such a lamination induces a dynamical
system on the moduli space of hyperbolic surfaces sharing many properties
with the classical Teichmüller horocycle flow. Mirzakhani gave a dynamical
correspondence between the earthquake and horocycle flows, defined
Lebesgue-almost everywhere. In this talk, we extend Mirzakhani’s conjugacy
and define an extension of the earthquake flow to an action of the upper
triangular group P in PSL(2,R) mapping certain flow lines to Teichmüller
geodesics. We classify the P-invariant ergodic probability measures as
those coming from affine invariant measures on quadratic differentials and
show that our map is a measurable isomorphism between P actions with
respect to these measures. This is joint work with Aaron Calderon.
To initiate movement, cells need to form a well-defined "front" and "rear" through the process of cellular polarization. Polarization is a crucial process involved in embryonic development and cell motility and it is not yet well understood. Mathematical models that have been developed to study the onset of polarization have explored either biochemical or mechanical pathways, yet few have proposed a combined mechano-chemical mechanism. However, experimental evidence suggests that most motile cells rely on both biochemical and mechanical components to break symmetry. I will describe a mechano-chemical mathematical model for emergent organization driven by both cytoskeletal dynamics and biochemical reactions. We have identified one of the simplest quantitative frameworks for a possible mechanism for spontaneous symmetry breaking for initiation of cell movement. The framework relies on local, linear coupling between minimal biochemical stochastic and mechanical deterministic systems; this coupling between mechanics and biochemistry has been speculated biologically, yet through our model, we demonstrate it is a necessary and sufficient condition for a cell to achieve a polarized state.
Emergent Research: The PIMS Postdoctoral Fellow Seminar
Abstract:
We consider a stochastic bistable two-species generalized Lotka-Volterra model of the microbiome and use it as a testbed to analytically and numerically explore the role of direct (e.g., fecal microbiota transplantation) and indirect (e.g., changes in diet) bacteriotherapies. Two types of noise are included in this model, representing the immigration of bacteria into and within the gut (additive noise) and variations in growth rate associated with the spatially inhomogeneous distribution of resources (multiplicative noise). The efficacy of a bacteriotherapy is determined by comparing the mean first-passage times (the average time required for the system to transition from one basin of attraction to the other) with and without the intervention. Concepts from transition path theory are used to investigate how the role of noise affects these bacteriotherapies.